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San Francisco 49ers head coach Jim Harbaugh stands on the sideline during the second quarter of an NFL football game against the Chicago Bears in Santa Clara, Calif., Sunday, Sept. 14, 2014. (AP Photo/Marcio Jose Sanchez)
San Francisco 49ers head coach Jim Harbaugh stands on the sideline during the second quarter of an NFL football game against the Chicago Bears in Santa Clara, Calif., Sunday, Sept. 14, 2014. (AP Photo/Marcio Jose Sanchez)Marcio Jose Sanchez/Associated Press

San Francisco 49ers: Why Week 2 Loss Falls on Coaching, Not Kaepernick

Joe Levitt
Sep 15, 2014

If a hypothetical stranger were to say that San Francisco 49ers quarterback Colin Kaepernick committed four turnovers in a Week 2 loss to the underdog Chicago Bears, what would the logical response entail?

That Kaepernick single-handedly cost the 49ers the game, right?

And what if said stranger also indicated that rookie cornerback Jimmie Ward coughed up three touchdowns to Bears wideout Brandon Marshall?

That Wardโ€™s inabilities in coverage were the next major factor in this losing effort to an inferior opponent. Were they not?

In a world where the turnover differential is the only means of tangible evidence, perhaps those arguments hold.

But when that seemingly basicโ€”yet intuitively significantโ€”thing called the eye test is at play, this unforgivable home-opening loss falls on the 49ers coaching staff.

Sep 14, 2014; Santa Clara, CA, USA; San Francisco 49ers head coach Jim Harbaugh reacts to a play during the second quarter at Levi's Stadium. The Chicago Bears defeated the San Francisco 49ers 28-20. Mandatory Credit: Ed Szczepanski-USA TODAY Sports

On its first offensive series of the game, San Francisco began inside the Bearsโ€™ 10-yard line. Rookie Aaron Lynch had provided the tremendous field position with a blocked punt.

After an incompletion and five-yard run by Kaepernick, Michael Crabtree hauled in the short touchdown pass. He made a great catch with his arms fully extended and secured the ball while falling to the ground.

However, the play clock hard already run a full second past zero. Blown call by the refs or not, where was head coach Jim Harbaugh with the timeout?

The 49ers were lucky that this oft-repeated blunder didnโ€™t cost them so early in the game.

Following another dominant series by San Franciscoโ€™s defense, the 49ers were once again just outside of the end zone in Bears territory. On 3rd-and-5 from the 9-yard line, right tackle Jonathan Martin committed a false start. The offense then stalled and settled for a field goal.

While Martin deserves plenty of blame, the coaches get some as well. Offensive coordinator Greg Roman failed to devise an effective play during a timeout against a thoroughly overmatched Bears defense.

And more significantly, that penalty was one of 16 totaling 118 yards for the game. That speaks to a lack of preparation by the coaching staffโ€”even if this matchup on Sunday Night Football was egregiously over-officiated.

Moving to the second quarter, Roman called three straight run plays on the 49ersโ€™ opening drive. After Frank Gore gained nine yards on first and second down, fullback Bruce Miller received the handoff and could not advance past the line of scrimmage.

Jan 12, 2013; San Francisco, CA, USA; San Francisco 49ers offensive coordinator Greg Roman (right) talks to running back Frank Gore (21) before the NFC divisional round playoff game against the Green Bay Packers at Candlestick Park.  Mandatory Credit: Car

Instead of exploiting an overloaded box by Chicagoโ€™s defense with a play-action pass, Roman opted for a predictable interior run. The offensive line must do better in the trenches moving forward, but so must the Ninersโ€™ play-callers.

Speaking of which, why was Kaepernick throwing on first down following a three-and-out by the Bears offense? Instead of utilizing the ground game to attack a tired defensive unit thatโ€™s susceptible to the run, Roman called for a deep pass play from midfield.

Kaepernick threw a dart to Boldin in a tight window. He was open momentarily, but safety Chris Conte took a gamble and won with a diving interception.

Call it second-guessing, but if Roman switches those last two plays, the 49ers are reasonably up by three scores instead of two.

As for Kaepernick, his decision wasnโ€™t necessarily ill-advised. Conte deserves ample credit for making a tremendous play on the ball. The same goes for Kapโ€™s lost fumble on the 49ersโ€™ next series. Defensive end Jared Allen didnโ€™t quit after initially being beat, and he jarred the ball lose with a well-timed hit.

Sep 14, 2014; Santa Clara, CA, USA; San Francisco 49ers quarterback Colin Kaepernick (7) fumbles the ball in the second quarter of their NFL game with the Chicago Bears at Levis Stadium. Mandatory Credit: Lance Iversen-USA TODAY Sports

Then, with San Francisco leading 17-0 with just over two minutes remaining in the first half, the Bears marched 80 yards down the field. Three penalties totaling 20 yardsโ€”including an illegal contact by Perrish Cox on third downโ€”clearly aided the drive.

And on 3rd-and-2 from the 17-yard line with just 18 seconds left, Niners defensive coordinator Vic Fangio made one of several crucial mistakes.

On an all-or-nothing play, Marshall caught one of his three scores from quarterback Jay Cutler. Despite making one of the better one-handed catches youโ€™ll ever see, that touchdown simply cannot happen.

Fangio did not put his guys in the right position. He did not ensure that Ward, his 5โ€™11โ€ rookie corner, received help over top and instead left him one-on-one against the 6โ€™4โ€ Marshall. And this wouldnโ€™t be the only time.

As for the halftime score, what should have been 23-0 or even 30-3, was instead 17-7, giving the Bears some pivotal momentum heading into the final two quarters.

Yet, with all thatโ€™s been documented and all that transpired in the second half, the critical turning point of this game materialized on San Franciscoโ€™s opening drive of the third quarter.

On 1st-and-5 from Chicagoโ€™s 6-yard line, Roman once again called for three consecutive runs. Gore went for one yard, Carlos Hyde went backward for two and Gore finished the unimaginative sequence with another futile one-yard gain.

Where was the killer instinct? Where was the creativity in the red zone?

SEATTLE, WA - JANUARY 19: Kicker Phil Dawson #9 and punter Andy Lee #4 of the San Francisco 49ers sit on the bench during the 2014 NFC Championship against the Seattle Seahawks at CenturyLink Field on January 19, 2014 in Seattle, Washington.  (Photo by Ch

After a long, sustained and soul-crushing drive that hammered the Bears and ate up more than half of the quarter, the Ninersโ€™ coaching staff didnโ€™t put the team in place for the knockout blow. They played it safe, settled for a field goal and kept Chicago within reach.

Furthermore, their failure to properly teach how to defend with the new NFL rules in place led to two more illegal-contact penalties on the next series.

The Bears cruised into 49ers territory on a drive that shouldโ€™ve otherwise ended on their own 21-yard line. Fangio left Ward covering Marshall by himselfโ€”againโ€”instead of jamming him at the line of scrimmage with another defender.

Chicago cut the lead to 20-14, scoring the first of its three straight touchdowns to win the game.

On the following two-play sequence, Kaepernickโ€™s second interception resulted from corner Kyle Fuller out-muscling Crabtree for the ball. Ninersโ€™ safety Eric Reid then tripped and left 6โ€™7โ€ tight end Martellus Bennett wide open for the easy three-yard score.

Fuller then made another fantastic play when No. 3 tight end Derek Carrier cut off his route instead of continuing down the seam when Kap rolled to his left. What wouldโ€™ve been a huge downfield completion turned into a takeaway, third touchdown to Marshall and Bearsโ€™ 28-20 lead.

Using the 5'11" Jimmie Wardโ€”a rookieโ€”against the 6'4" Brandon Marshall was an obscene mismatch.

Ward, of course, had the entirely unfair coverage assignment on a corner fade to one of the NFLโ€™s premier red-zone threats.

Even though this game was already decided, Kaepernick managed a fairly impressive last-ditch effort. He helped bring the 49ers to the Bearsโ€™ 17-yard line with 1:24 left in the fourth quarter.

Despite two additional instances of clock mismanagementโ€”which falls mostly on the coachesโ€”the 49ers indeed had a chance. Unfortunately, Crabtree stopped just short on his end-zone route, causing an otherwise perfect pass to sail through his hands on fourth down.

But again, this lopsided matchup should never have come down to this deciding moment. It should have been sealed at halftime.

So, while any quarterback who throws three picks and loses a fumble plays a role in his teamโ€™s loss, Kaepernick was not the primary reason on this day.ย Throw away his inconsequential personal-foul penalty and the advanced statisticians at Pro Football Focus would have given him a positive grade (subscription required).

Kaepernick actually performed much better than most people would have otherwise thought.

Rather, it was poor play-calling, continued mismanagement of the clock and a total void of killer instinct from the coaching staff that contributed to this heartbreak at Leviโ€™s Stadium.

Thankfully, it was only Week 2.

Team and player stats courtesy of ESPN.com.

Joe Levitt is a Featured Columnist for Bleacher Report, waxing academic, colloquial and statistical eloquence on the San Francisco 49ers. Follow him on Twitter @jlevitt16