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Yes, I believe Aaron Rodgers is a better quarterback than Tom Brady.
Rodgers has been the more productive of the two quarterbacks since he finally got the job from Brett Favre, beating Brady in touchdowns 103 to 99 in the last three years (Brady tore his ACL Rodgers' first year starting) and leading him in Super Bowl trophies, 1-0.
The reason I believe Rodgers is better than Brady (and the best quarterback in the NFL today) will not show up in any box score. Rodgers has the accuracy of Brady but is much more mobile, and thus, more difficult to stop.
While Brady has one move against the rush (step up and hope a second pocket develops), Rodgers can extend the play with his legs and beat you downfield.
I see at least one more Lombardi Trophy in Rodgers' future.
Honorable Mention: Tom Brady, QB, New England Patriots; Clay Matthews, LB, Green Bay Packers; Troy Polamalu, SS, Pittsburgh Steelers; DeSean Jackson, WR, Philadephia Eagles; Maurice Jones-Drew, RB, Jacksonville Jaguars